PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g036915m
Common NameCISIN_1g036915mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 308aa    MW: 35575.5 Da    PI: 10.0653
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g036915mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.73.3e-16171260198
                        EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                        f+k +++s+v+   +l lp +f++eh     +++  +tl de+ +++  k+  +k++    l++GW++F  +++L +gD +vF+l++  +f 
  orange1.1g036915m 171 FVKPMLQSHVTGGFWLGLPVHFCKEHlP---HSDEIITLVDEEENEFPTKYLAEKTG----LSGGWRGFSIDHELVDGDCLVFQLIKPATF- 254
                        89************************42...34557***************555555....***********************9986555. PP

                        .EEEEE- CS
                 B3  92 lvvkvfr 98 
                         +v ++r
  orange1.1g036915m 255 -KVYIIR 260
                        .887776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-20164260IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-24164260IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-25169260No hitNo description
PROSITE profilePS5086311.138171262IPR003340B3 DNA binding domain
PfamPF023622.6E-14171260IPR003340B3 DNA binding domain
SMARTSM010196.6E-21171262IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
FPRRALGNAT VVISLHFFPF FFFFNFGSLE ITTPKDKRKT LKMVESKLTY EECRRQRMEE  60
NKKRMEELKL NVLARSLKTP VSKPSPVKKR VSKPKPASAP VRRSSRVADK PPPNYNEDPF  120
EPFLTRRRLT CRSYQRRNLL NRVYASDEER ASAIDRADEV QSGLDSQYPS FVKPMLQSHV  180
TGGFWLGLPV HFCKEHLPHS DEIITLVDEE ENEFPTKYLA EKTGLSGGWR GFSIDHELVD  240
GDCLVFQLIK PATFKVYIIR VYVSEFNDDN NDVNKKNEKN NMENKEDSSA RITRSAKRTR  300
SSNLFKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423041.10.0hypothetical protein CICLE_v10029072mg
SwissprotQ1G3M38e-88Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A067DTV80.0A0A067DTV8_CITSI; Uncharacterized protein (Fragment)
STRINGPOPTR_0009s10590.11e-108(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-79B3 family protein